miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|88572742|gb|CI664313.1|CI664313 TTCCCTTCTTCCCTACTCCTCCCACTCCACTCCACGCGCACCTCGCCGCGTCCCTGATCTGATTGATTGATGCCGGGGCG
GCCGTGATGGCGGCGGGAGCAGGAGCGGGCGGCGGGGGCGGGGAGGGCGACACAAACGGGGGAGGCACCTCCCCGGGTGG
CGTGTCGGCGGCGGCGCNGGCGATCGGGCCCCACCACCTCGGGGTTGCCGCCGCGGAAGAAGCAATGTGGCAAATGACTC
TAGGAGGAGGAGAGTCTATGGAGTCCACTCCATACCCTGAGCGGATAGGAGAGCCAGACCGCACTTATTATATGAGGACT
GCACTATGTACGTTCGGGATGACCTGCAAATTCAATCCACCCCCAAATAGAAAACTGGCTGTCGCTGGTGCACGGATGAC
TGGA




Most similar to sp|Q2QT65|C3H66_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q2QT65|C3H66_ORYSJ Zinc finger CCCH domain-containing protein 66
           OS=Oryza sativa subsp. japonica GN=Os12g0405100 PE=2
           SV=1
          Length = 454

 Score =  140 bits (354), Expect = 2e-33
 Identities = 65/72 (90%), Positives = 66/72 (91%)
 Frame = +3

Query: 189 PHHLGVAAAEEAMWQMTLGGGESMESTPYPERIGEPDRTYYMRTALCTFGMTCKFNPPPN 368
           PHHLGVAAAEEAMWQMTLGGGESMESTPYPERIGEPD +YYMRT LC FGMTCKFN PPN
Sbjct: 35  PHHLGVAAAEEAMWQMTLGGGESMESTPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPPN 94

Query: 369 RKLAVAGARMTG 404
           RKLAVA ARM G
Sbjct: 95  RKLAVAAARMNG 106